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Phyletica

Exploring biodiversification.

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Scripting for Biologists

Contents

This course is designed to help biology graduate students learn computational skills that will allow them to approach biological questions in new ways.

Topics

Topic 1: Getting set up

Topic 2: Intro to Bash

Topic 3: Intro to Git

Topic 4: Intro to Python

Topic 5: Scripting best practices

Topic 6: Regular expressions

Topic 7: Reading and writing files

Topic 8: Debugging

Topic 9: Using external packages to manipulate, analyze, and plot data

Topic 10: A simple demo of argparse for parsing command-line args

Topic 11: Classes in Python

Extras

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