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Wen Huang, Naoki Takebayashi, Yan Qi, and Michael J. Hickerson. MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity. BMC Bioinformatics, 12:1, 2011. doi:10.1186/1471-2105-12-1.

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Jamie R. Oaks. A time-calibrated species tree of Crocodylia reveals a recent radiation of the true crocodiles. Evolution, 65(11):3285–3297, 11 2011. URL: http://onlinelibrary.wiley.com/doi/10.1111/j.1558-5646.2011.01373.x/abstract, doi:10.1111/j.1558-5646.2011.01373.x.

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Jamie R. Oaks. An improved approximate-bayesian model-choice method for estimating shared evolutionary history. BMC Evolutionary Biology, 14:150, 07 2014. URL: http://www.biomedcentral.com/1471-2148/14/150/abstract, doi:10.1186/1471-2148-14-150.

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Jamie R. Oaks. Full Bayesian comparative phylogeography from genomic data. Systematic Biology, 68(3):371–395, 05 2019. URL: https://doi.org/10.1093/sysbio/syy063, doi:10.1093/sysbio/syy063.

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Jamie R. Oaks, Nadia L’Bahy, and Kerry A. Cobb. Insights from a general, full-likelihood Bayesian approach to inferring shared evolutionary events from genomic data: inferring shared demographic events is challenging. bioRxiv, 07 2019. URL: https://www.biorxiv.org/content/early/2019/06/22/679878, arXiv:https://www.biorxiv.org/content/early/2019/06/22/679878.full.pdf, doi:10.1101/679878.

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Jamie R. Oaks, Charles W. Linkem, and Jeet Sukumaran. Implications of uniformly distributed, empirically informed priors for phylogeographical model selection: a reply to hickerson et al. Evolution, 68():3607–3617, 12 2014. URL: http://onlinelibrary.wiley.com/doi/10.1111/evo.12523/abstract, doi:10.1111/evo.12523.

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Jamie R. Oaks, Cameron D. Siler, and Rafe M. Brown. The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate-driven vicariant diversification across an island archipelago. Evolution, 73(6):1151–1167, 06 2019. URL: https://doi.org/10.1111/evo.13754, doi:10.1111/evo.13754.