If you use ecoevolity, please cite it as:

Oaks, J.R. 2018. Full Bayesian comparative phylogeography from genomic data. bioRxiv 324525; doi:

We also strongly encourage you to cite the original description of the likelihood:

Bryant, D., Bouckaert, R., Felsenstein, J., Rosenberg, N. A., and Roychoudhury, A. 2012. Inferring species trees directly from biallelic genetic markers: Bypassing gene trees in a full coalescent analysis. Molecular Biology and Evolution, 29(8): 1917–1932.